Nr	Title/Link to abstract	Contact person
4	SNP Identification in Schistosoma mansoni Expressed Genes	Adhemar Zerlotini
7	Comparative Modeling of the Quaternary Structure of Alpha4 Beta1Integrin (VLA-4)	João Hermínio Martins da Silva
8	Molecular Dynamics Simulations of Thyroid Hormone Receptors	Leandro Martinez
9	Phylogenomic analysis, a tool to enlighten protein interaction: an approach to RhoGAP domain-containing proteins studies	Marcelo Brandão
10	An Interative Protein Interface Surface Java Viewer	Michel Yamagishi
11	Reducing Dimensionality from Immunoblots Experiments Databases Using Clustering Methods	Luciana Ferrari
13	Molecular Modeling of the Protein Twitching Motility of Xylella fastidiosa	José Gilberto Jardine
15	Molecular Dynamics of the Human Acetylcholinesterase inhibited by Tabun in complex with the Pralidoxime and with its deaza analogue in the neutral and anionic forms	Arlan da Silva Gonçalves
16	Development of single-copy rpoB oligonucleotide primers for SybrGreen Real Time PCR detection of human pathogenic bacteria	Daniel Saito
17	Design of Python Scripts to Assist in Silico Characterization of Microsatellites in Eucalyptus spp.	Edenilson Rabello
18	Structural Analyses of Cry 1Ac Protein from Bacillus thuringiensis	Katia de Jesus
21	Template coexistence in prebiotic vesicle models	Daniel Gomes Marques Silvestre
23	Molecular dynamics analysis of glutathione transferases sugarcane mutants and their interactions with atrazine	Andrea Guelfi
24	A Development of a Tool for UniGene Data Mining	Renato Puga
25	Patterns of gene expression from Leishmania ProGeNE cDNA libraries	Frida Casanova
26	Interaction of Chlorpromazine with phospholipid monolayers	Mónica Pickholz
28	Degenerate Primers Design Targeting Glioxylate Pathway Enzymes: Isocitrate lyase and Malate synthase in Leishmania chagasi	Amely Martins
33	Prediction of protein-protein interaction sites: comparing Neural Networks and Support Vector Machines approaches	Roberto Higa
34	Degenerate Primer Design Strategy Targeting the NHX1 Antiporter Gene from Twenty Plant Species	Vinicius Maracajá-Coutinho
35	Searching for genes involved in novel mechanisms of tumor cell death triggered by FGF2	Fabio Nakano
36	A Strategy for Sequences Analysis Classified as “No Hits” in Venom of Bothrops jararacussu	Silvana Giuliatti
39	A Search for Diferences in Genic Expression between Normal and Tumoral Prostate Tissue	Jean Daniel Malia
40	Phylogeny of the nitrogenase complex provides evidence for horizontal gene transfer between bacteria and archaea	João Lídio da S.G. Vianez Júnior
46	MolEvoWeb: a simple and powerful web-based front-end for molecular evolution applications	Pablo Nehab-Hess
48	Finding thermostable proteins in mesophiles, using the (E+K)/(Q+H) ratio	Marx Gomes Van der Linden
49	Dynamical System Modeling of the Estrogen Transcription Control Network	Marcelo Ris
50	Review of Common Protein Database Structures	Wallace Vinícius Oliveira Reis
58	Shifting of Darwinian Selection Regimen Due to Local Adaptation on a Canine Parvovirus Population.	Elcio Leal
59	Using Blast to Discovery Physiologic Substrates of Proteases	Pedro Francisco Angelo Junior
60	Detection of candidate SNPs involved in immunologic response from a micro-arrays database in genetic panels affected by human papillomavirus	Marx Gomes Van der Linden
61	A System for Gene Expression Profile Analysis	Carlos Fischer
62	Partitional Clustering applied to Bioinformatics: Case Study in the analysis of types of HPV	Vicente Brasileiro
63	Microarray-based genomic comparison between Leifsonia xyli subsp. xyli and Leifsonia xyli subsp. cynodontis.	Daniel Dias Rosa
65	Predicting Globin Folding Pathways Using an Unfolding Heuristic	Raquel Melo
66	A Computational Approach for Alternative Splicing Analysis in Human Genome	Murilo Castro Cervato
67	DJ-Cluster: an extensible clustering and data-visualization tool	Diogo Ferreira da Costa Patrao
70	Can we use different amplification protocols in the same microarray experiment?	Luiz Paulo Camargo
71	Analysis of Schistosoma mansoni Microarray Data Using Gene Ontology Terms	Thiago Venancio
72	STUDY OF THE INFLUENCE OF THREE BASIC AMINO ACIDS ON THE BASIC FIBROBLAST GROWTH FACTOR STRUCTURE	Gustavo Brancaleoni
74	Evolution of bacterial cell division	Robson Francisco de Souza
77	A system for integrating bioinformatics tools, text mining and databases for cancer research	Luiz Almeida
79	A feature selection approach applied to biological classification	Carlos Borges
80	Simulation studies of the antimicrobial peptide indolicidin	Carlos Fuzo
82	TRACTOR_DB as a source for comparative studies of transcriptional regulation mechanisms in gamma-proteobacterial genomes	Vladimir Espinosa
83	Classification and Characterization of Biological Tissue Sections by Imaging Mass Spectrometry (IMS)	Marco Antônio Vilela
84	A New Tool for Species Independent Gene Finding for Crinipellis Perniciosa Genome Annotation	Ramon Vidal
86	System for Localization and Functional Analysis of Domains and Highly Conserved Amino Acids in Phospholipases A2 from Serpents Venoms	Fernando Camargo Filho
87	PHYLOGENETIC ANALYSIS OF Mycoplasma hyopneumoniae BRAZILIAN ISOLATE BASED ON MULTIDRUG RESISTANCE PROTEIN GENE	Fernanda Miquelitto Figueira da Silva
89	Genome rearrangement analysis of three Mycoplasma hyopneumoniae strains.	Marcos Oliveira de Carvalho
91	Sabia-EST - A new tool for assembly and annotation	Oberdan Cunha
92	Inference of carcinogenicity of Human papilomaviruses based on Hidden Markov Model and Support Vector Machines	David Morais
93	Interface for release and manipulation of cocoa genotype	Ramon Medrado
94	Building PROBACTER: a database of plant-associated bacteria complete proteomes	Fernanda Almeida
96	Building a system to guide the genome sequencing of Leifsonia xyli subsp. cynodontis	Alexandre Paschoal
97	A computational approach for the identification, clustering and annotation of analogous genes	Thomas Otto
98	Intrinsically Multivariately Predictive Genes	Ronaldo Hashimoto
99	On the role of exon-shuffling in the acquisition of signal peptides by human proteins	Maria Dulcetti Vibranovski
101	Selection and sequencing of Schistosoma mansoni ESTs representing full-length clones	Alessandra Campos
102	Cell-Cycle Control System Modeling and Simulation	Nestor Walter Trepode
103	Probabilistic Tree Based Phylogenetics of Protein Families	Florencia Leonardi
105	PREDICTION OF AMINO-ACID SEQUENCE CHARACTERISTICS OF PCV2 REPLICASE GENE	Luiza Antunes de Castro
106	PharmaCon - An Annotated Database of Known Therapeutical Drugs	Julio Lopes
107	Identification of Thrombin Inhibition by Flavonoid with Automatic Docking	Julio Lopes
108	Identification of New Targets for Violacein Pigment by Inverse Docking against PDB	Julio Lopes
109	Identification of new Angiotensin Converting Enzyme Inhibitors in PharmaCon Database by Automatic Docking	Julio Lopes
112	Identification of novel imprinted genes using allele-specific SAGE and MPSS tags.	Jorge Estefano S. de Souza
113	A Computational Tool for Transposable Element Analysis.	Carlos Fischer
115	Xylella Phage-Navigator: a web-based software to study phage-related regions	Alessandro Varani
116	A Real-Time Imaging System for Automated Diagnosis of Avian Coccidiosis	Cesar Beltrán Castañón
117	Analysis of low and high frequency intron retention events and the role of cis-regulatory splicing elements	Noboru Jo Sakabe
118	LyM: a new tool to reach the best fold in gene expression comparison	Fernando Alberto
119	Protein Coding Regions Identification through the Modified Morlet Transform	Jesús Mena-Chalco
120	Identification Of Salt Stress Induced Genes In Sucarcane By Data Mining In SUCEST	Beatriz Ferreira
122	Brazilian HIV-1 Protease mutants complexed with TL-3 inhibitor: Molecular Modeling and Dynamics Studies	Paulo Ricardo Batista
126	Comparative analysis of unidimensional and bidimensional clustering approaches of gene expression data	Daniele Yumi Sunaga
127	Finding differential activity of functional modules in normal and tumor samples from stomach and esophagus	Gustavo Henrique Esteves
128	Development of a Data Base of Brazilian Serpents Poisons and a Computational Analysis of Fosfolipases A2 Primary structures	Saulo França Amui
129	An Interactive Tool for Entropy Based Pattern Analysis	Luiz Gustavo Martins
130	Computational Prediction of Extracellular Proteins in Kluyveromyces lactis Using Algorithms Based in Neural Network and Hidden Markov Model	Otávio Brustolini
131	Molecular Dynamics Simulation of a Mesophilic-Thermophilic Pair of Xylanases: The investigation of a active site movement	Davi Serradella Vieira
132	2D Maps of Protein Interface Surfaces	Marcelo Narciso
133	Comparison of Two Classification Models for Serine Proteases Based on Frequency and Physicochemical Properties of Amino Acids	Cristina Ribeiro
136	MOLECULAR INVESTIGATION OF Rickettsia felis IN ECTOPARASITES FROM AN ENDEMIC AREA FOR THE BRAZILIAN SPOTTED FEVER	Karla Andrade Oliveira
138	Bioinformatics As a Tool In The Teaching-learning Process Of Genetics In Undergratuate Course Of CESMAC, In Alagoas, Brazil	Benisio Ferreira da Silva Filho
140	The structure of ubiquitin in an aqueous solution: studies by molecular dynamics	Fernanda Mazzé
141	Identification of New Vaccine Candidates from Schistosoma mansoni transcriptome by a Bioinformatic Approach	Fernanda Cardoso
143	Identification of potential regulatory motifs in OR genes	Pedro Galante
145	Computational design and testing of family specific primers for PCR	Javier Iserte
146	Prediction of transcription factor binding sites in Xylella and Xanthomonas using a phylogenetic-footprint approach	Pablo Freire
147	Machine learning-based clustering analyses of venom 2D-LC/MS data to infer phylogenetic relationships in scorpions from the Buthidae family	Breno Rates
148	The influence of taxon sampling on the bootstrap value supporting Brazilian HIV-1 subtype C monophyly	Andre Soares
149	Estimation of Probabilistic Genetic Networks of Plasmodium falciparum from Dynamical Expression Signals	David Corrêa Martins Jr
150	Characterization of ITS/5.8S sequences from species of Dioclea (Leguminosae) occurring in the state of Ceará, Brazil: a molecular tool for identification	Daniel Jorge
151	Seaching for Regulatory DNA Binding Sites Using an Image Tresholding Technique Based on Tsallis Entropy	Marcelo Trindade dos Santos
153	HAMAP Brasil: the annotation of proteins from pathogenic bacteria	CRISTIANO MOREIRA
155	TouchBlast: A Graphical Interface for Presentation of Blast Results	Éderson Dorileo
157	More Options for the Results in Microsatellite Searches	Carlos Fischer
158	What makes active site amino acids so different from the others: defining the structural descriptors specific for activity	Goran Neshich
160	Comparison Between Complete Genomes of Vibrionacea Species	Patricia Cogo
161	PRODUCTION AND CLASSIFICATION OF ESTs DERIVED FROM THE Tityus serrulatus VENOM GLAND cDNA LIBRARY	Mauricio Mudado
162	FindTransp: A Computer Tool for Helping to find out a putative Transposon Sequence	Otávio Brustolini
163	Comparative Genomics of the fmr1 Gene Regulatory Sequence for Transcription Factor Binding Sites Analysis	Luismar Porto
164	Algorithm of protein resides submission by recursive steps to optimization geometric calculation	Roceli Lima
166	VIRTUAL AND NOMINAL ESTIMATIVE OF EXPRESSION USING EST, KOG PROTEINS AND MICROARRAY DATA	Mauricio Mudado
167	Understanding genome architecture and gene content of Leifsonia xyli subsp. cynodontis.	Marcelo Marques Zerillo
169	JMOL and STING integration: a STING for multiple platforms	Sergio Cruz
170	ESTs of immature stages in Melipona bees revealing genes involved in caste and sex determination	Carlos Gustavo Nunes-Silva
172	The REALGENE network bioinformatics on-line course	Carlos Gustavo Nunes-Silva
174	LGHM-DataBase: sistema integrado de informações biológicas	Ana Cecilia Feio-dos-Santos
176	Effect of water on toxin crystal structures, influence of secondary structure patterns.	Cécile Fleury
177	Identification Of The Divergent Genes In Groups Of Paralogs From Microganisms With Complet Genome.	Daniela Barbosa
178	Application of Genetic Algorithms to analyze protein biomarker of stability in SDS-PAGE digital images.	Laurence Amaral
179	STING_DB: A relational database of structural parameters for protein analysis	Stanley Oliveira
180	QACT-CV conformational structure proposal by theoretical concepts	Isabelle Cordeiro
181	Identification of Human TFBSs using the Drosophila melanogaster dfxr Gene by in silico Footprinting	Luismar Porto
182	Metabolic Flux Analysis as a Tool to Improve Hydrogen Production by a Genetic Modified Bacterium	Luismar Porto
183	Theoretical calculations to local conformational analysis of myotoxins of the Crotalus sp	Antonio Fernandes
184	Comparative Analysis Of Metabolic Pathways Databases Using Glycolysis As A Standard Pathway	Renato Milani
185	Evaluation of Collaborative Learning of Bioinformatics	Humberto Madeira
186	Transcriptional Regulation Biological Model of the fmr1 Gene	Luismar Porto
187	Analysis of Tryptophan Genes Structure in Chromobacterium violaceum	Luismar Porto
188	CvioCyc: a Pathway-Genome Database for Chromobacterium violaceum	Luismar Porto
189	Modeling and Dynamic Simulation of trp Operon in Bacillus subtilis	Luismar Porto
190	Classification of Globins based on amino acid content: An exploratory data analysis approach.	Michael Waisberg
191	Analysis of the bcsZ Gene of Chromobacterium violaceum	Luismar Porto
192	Biotechnological Patent Crawling And Classifying	Wesley Dias Maciel
194	A system for validating classifiers and its use on evaluating neighborhood size for splice site prediction	André Kashiwabara
195	GelAnalis: Computer program for image quantification of DNA in electrophoresis gel in radiation interaction study.	Felix Mas Milian
196	Comparative Analysis of Genes Involved in Matrix Formation in Chromobacterium violaceum Biofilm	Luismar Porto
197	ClusterMining: A framework to clustering and analysis of gene expression data	Israel Tojal Silva
198	Detecting human proteins aith alternative splice sites: a structural approach	Elza Durham
200	Score System for SAGE Tags	Daniel Guariz Pinheiro
203	New features in ProteomeDB: a dabase integrated system for Proteomics	Itaraju Junior Baracuhy Brum
205	Genes Considered Housekeeping do not Have Low Variation in their Expression – A Large Scale Analysis	Saulo de Paula Pinto
206	Probing Organizations	Mauricio Kritz