|
Information extracted by AB3C from Lattes system at CNPq for: Sandro José de Souza |
| Address | Instituto Ludwig de Pesquisa sobre o São Paulo.
Rua Professor ant6onio Prudente, 109 4º andar Liberdade 01509010- Sao Paulo, SP- Brasil Telefone: (11) 33883200 Ramal: 3211 Fax: (11) 32077001 E-mail: sandro@compbio.ludwig.org.br URL da Homepage: www.ludwig.org.br |
| Published articles |
| 1. | DE SOUZA, S. J.; SABAGA, J.; BRENTANI, Ricardo Renzo et al. Anti-platelets autoantiboidies from ITP patients recognize an epitope in GPIIb/IIIa deduced by complementary hydropathy.. Immunol, Estados Unidos, v. 7, p. 17-22, 1992. |
| 2. | DE SOUZA, S. J.; BRENTANI, Ricardo Renzo. Collagen Binding Site in Collagenase Can Be Determined Using the Concept of Sense-Antisense Peptide Interactions. Journal of Biological Chemistry, Estados Unidos, v. 267, n. 19, p. 13763-13767, 1992. |
| 3. | PASQUALINI, R.; LEVI, J. E.; AZUL, M. I. S. et al. A Monoclonal Antibody (IID510g52) For the Determination of Functional Domains Within Integrin Cell Surface Receptors.. Hybridoma, Estados Unidos, v. 11, n. 6, p. 741-745, 1992. |
| 4. | DE SOUZA, S. J.; BRENTANI, Ricardo Renzo. Sequence Homology Between a Bacterial Metalloproteinase and Eukaryotic Matrix Metalloproteinases. Journal of Molecular Evolution, New York, v. 36, p. 596-598, 1993. |
| 5. | VIEIRA, J. L.; CHAMMAS, R.; VERDE, D. M. S. V. et al. Extracellular matrix components of the mouse thymic microenviroment, III Thymic epithelial cells express the VLA6 complex that is involved in laminin-mediated interactions with thymocytes.. Immunol, Estados Unidos, v. 5, n. 11, p. 1421-1430, 1993. |
| 6. | DE SOUZA, S. J.; BRENTANI, M. M.; BRENTANI, Ricardo Renzo. Regulation of extracellular matrix-degrading proteases.. Ciência e Cultura, Estados Unidos, v. 45, n. 5, p. 313-318, 1993. |
| 7. | DE SOUZA, S. J.; BRENTANI, Ricardo Renzo. On the struture / function relationship of polymorphonuclear-leukocyte collagenase.. Biochemical Journal, Estados Unidos, v. 300, p. 605-607, 1994. |
| 8. | DE SOUZA, S. J.; MADAIO, M. P.; JULIANO NETO, L. et al. A monoclonal Autoantibody against a Complementary Peptide Recognizes Interstitial Collagenase.. Immuno, Estados Unidos, v. 5, p. 172-176, 1994. |
| 9. | LONG, M.; DE SOUZA, S. J.; GILBERT, W.. Evolution of the intron-exon structure of euKaryotic gene.. Curr Opin Genet Develop, Estados Unidos, v. 5, p. 774-778, 1995. |
| 10. | DE SOUZA, S. J.; PEREIRA, H. M.; JACCHIERI, S. et al. Colagen/ collagenase interaction: Does the enzyme mimic the conformation of its own substrate?. FASEB Journal, Estados Unidos, v. 10, p. 927-930, 1996. |
| 11. | SANTOS, M. A. V.; DE SOUZA, S. J.; BRENTANI, Ricardo Renzo et al. Polymorphonuclear Leukocytes Present Laminin Peptides in Endocytic Compartments.. Biovhemical And Biophysical Research Communications, Estados Unidos, v. 221, p. 837-842, 1996. |
| 12. | LONG, M.; DE SOUZA, S. J.; ROSENBERG, C. et al. Exon shuffing and the origin of the mitochondrial targenting function in plant cytochrome c1 precursor.. Pnas, Estados Unidos, v. 93, p. 7727-7731, 1996. |
| 13. | DE SOUZA, S. J.; LONG, M.; GILBERT, W.. Introns and gene evolution.. Genes To Cells, Estados Unidos, v. 1, p. 493-505, 1996. |
| 14. | DE SOUZA, S. J.; LONG, M.; SCHOENBACH, L. et al. Intron positions correlate with module bondaries in anciet proteins. Pnas, Estados Unidos, v. 93, p. 14632-14636, 1996. |
| 15. | DE SOUZA, S. J.. What we know about the function of introns ?. Scientific American On Line, Estados Unidos, 1996. |
| 16. | LONG, M.; DE SOUZA, S. J.; GILBERT, W.. Delta- Interacting Protein A and the Origin of Hepatitis Delta Antigen. Science, Estados Unidos, v. 276, p. 824-825, 1997. |
| 17. | GILBERT, W.; DE SOUZA, S. J.; LONG, M.. Origin of Genes. Pnas Usa, Estados Unidos, v. 94, p. 7698-7703, 1997. |
| 18. | MARTINS, V. R.; GRANER, E.; ABREU, J. G. et al. Complementary hydropathy identifies a cellular prion protein receptor.. Nature Med, Estados Unidos, v. 3, n. 12, p. 1376-1382, 1997. |
| 19. | LONG, M.; DE SOUZA, S. J.; GILBERT, W.. The yeast splice site revisited: A new exon consensus from genome analysis.. Cell, Estados Unidos, v. 91, p. 739-740, 1997. |
| 20. | DE SOUZA, S. J.; LONG, M.; SCHOENBACH, L. et al. The correlation between introns and the three-dimensional structure of proteins.. Gene, Estados Unidos, v. 205, p. 141-144, 1997. |
| 21. | DE SOUZA, S. J.. The origin and evolution of introns: a debate. . A Biomednet Publication, Estados Unidos, v. 1, 1997. |
| 22. | LONG, M.; DE SOUZA, S. J.; ROSENBERG, C. et al. Relationship between proto-splice sites and intron phase: Evidence from dicodon analysis.. Pnas Usa, Estados Unidos, v. 95, p. 219-223, 1998. |
| 23. | DE SOUZA, S. J.; LONG, M.; KLEIN, R. J. et al. Toward a resolution of the introns early / late debate: Only phase zero introns are correlated with the structure of ancient proteins.. Pnas Usa, Estados Unidos, v. 95, p. 5094-5099, 1998. |
| 24. | LONG, M.; DE SOUZA, S. J.. Intron-Exon Strutures: From Molecular to Population Biology. Advance In Genome Biology, USA, v. 5A, p. 143-178, 1998. |
| 25. | DE SOUZA, S. J.; ROY, S.; GILBERT, W.. Centripetal modules and ancient introns.. Gene, Estados Unidos, v. 238, p. 85-91, 1999. |
| 26. | GILBERT, W.; DE SOUZA, S. J.. Introns and the RNA World. Cshl Press, p. 221-231, 1999. |
| 27. | SAKHARKAR, M.; LONG, M.; TAN, T. W. et al. ExInt: an Exon/Intron database.. Nucleic Acids Research, Estados Unidos, v. 28, p. 191-192, 2000. |
| 28. | DIAS NETO, E.; CORREA, R. G.; ALMEIDA, S. V. et al. Shotgun sequencing of the human transcriptome with Open ORF expressed sequence tags.. Pnas Usa, Estados Unidos, v. 97, p. 3491-3496, 2000. |
| 29. | CORREA, R. G.; CARVALHO, A. F.; PINHEIRO, N. A. et al. NABC1 (BCAS1): Alternative Splicing and Downregulation in Colorectal Tumors.. Genomics, Estados Unidos, v. 65, p. 299-302, 2000. |
| 30. | DE SOUZA, S. J.; SAKHARKAR, M.; LONG, M.. IEKb- An Exon intron Knowledge base from database.. Bioinformatics, Estados Unidos, v. 16, p. 1151-1152, 2000. |
| 31. | DE SOUZA, S. J.; CAMARGO, Anamaria A; BRIONES, M. R. S. et al. Identification of human chromosome 22 trascribed sequences with ORF expressed sequence tags.. Pnas Usa, Estados Unidos, v. 97, p. 12690-12693, 2000. |
| 32. | SAKARKHAR, M. K.; TAN, T. W.; DE SOUZA, S. J.. Geration of a database cotainning discordant intron positions in euKaryotic gene (MIDB). Bioinformatics, Estados Unidos, v. 17, p. 671-675, 2001. |
| 33. | CORREA, R. G.; BENGSTON, M. H.; SALIM, A. C. M. et al. Human Semaphorin 6B [(HSA) SEMAB], A Novel Human Class 6 Semaphorin Gene: Alternative Splicing and All-Trans-Retinoic Acid-Dependent Downregulation in Glioblastoma Cell Lines. Genomics, Estados Unidos, v. 73, p. 343-348, 2001. |
| 34. | SIMPSON, Andrew John George; DE SOUZA, S. J.; CAMARGO, A. A. et al. Definition of the gene content of the human genome: the need for deep experimental verification. . Comparative And Funcional Genomics, Estados Unidos, v. 2, p. 169-175, 2001. |
| 35. | CABALLERO, O. L.; DE SOUZA, S. J.; BRENTANI, Ricardo Renzo et al. Alternative spliced transcriptas cancer markers.. Disease Markers, Estados Unidos, v. 17, p. 67-75, 2001. |
| 36. | DE SOUZA, S. J.; FEDOROV, A.; CAO, X. et al. Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns.. Pnas, Estados Unidos, v. 98, n. 23, p. 13177-13182, 2001. |
| 37. | CAMARGO, Anamaria A; SAMAIA, H. P. B.; DIAS NETO, E. et al. The Contribution of 700,000 ORF Sequence tags to the definition of the human transcriptome . Pnas, v. 98, p. 12103-12108, 2001. |
| 38. | SAKHARKAR, M. K.; PASSETTI, Fábio; SOUZA, Jorge Estefano Santana de et al. ExInt: an Exon intron Database.. Nucleic Acids Research, Estados Unidos, v. 30, n. 1, p. 191-194, 2002. |
| 39. | CAMARGO, A. A.; DE SOUZA, S. J.; BRENTANI, Ricardo Renzo et al. Human gene discovery through experimental definition of transcribed regions of the human genome.. Biologia, Estados Unidos, v. 6, p. 13-16, 2002. |
| 40. | LEERKES, Maarten Rudolph; CABALLERO, O. L.; MACKAY, A. et al. In Silico Comparison of the Ttranscriptome Derived from Purified Normal Breast Cells and Breast Tumor Cell Lines Reveals Candidate Upreguated Genes in Breast Tumor Cells.. Genomics, Estados Unidos, v. 79, n. 2, p. 257-265, 2002. |
| 41. | FEDOROV, A.; DE SOUZA, S. J.; GILBERT, W.. Do introns favor or avoid regions of amino acid conservation?. Mol Biol Evol, Estados Unidos, v. 19, p. 521-522, 2002. |
| 42. | STRAUSBERG, R. L.; CAMARGO, A. A.; RIGGINS, Gregory et al. An international database and integrated analysis tools for the study of cancer gene expression.. Pharmacogenomics, USA, v. 2, p. 156-164, 2002. |
| 43. | REYMOND, A.; CAMARGO, A. A.; DEUTSCH, S. et al. Nineteen Additional Unpredicted Transcripts from Human Chromosome 21.. Genomics, USA, v. 79, n. 6, p. 824-832, 2002. |
| 44. | ISELI, C.; STEVENSON, B. J.; DE SOUZA, S. J. et al. Long-Range Heterogeneity at the 3´ Ends of Human mRNAs. . Genome Research, USA, v. 12, p. 1068-1074, 2002. |
| 45. | BOOM, K.; OSORIO, E. C.; GREENHUT, S. F. et al. An anatomy of normal and malignant gene expression.. Pnas, USA, v. 99, n. 17, p. 11287-11292, 2002. |
| 46. | OSORIO, E. C.; SOUZA, Jorge Estefano Santana de; ZAIATS, A. C. et al. pp-Blast: a pseudo-parallel Blast.. J Med Biol, 2003. |
| 47. | DE SOUZA, S. J.. The emergence of a synthetic theory of intron evolution.. Genetica, USA, v. 118, p. 117-121, 2003. |
| 48. | SILVA, Ana Paula M; SALIM, A. C. M.; BULCARELLI, A. et al. Identification of 9 novel transcripts and two RGSL gene within the hereditary prostate cancer region (HPC1) at 1q25. Gene, USA, v. 310, p. 49-57, 2003. |
| 49. | SAKABE, Noboru Jô; SOUZA, Jorge Estefano Santana de; GALANTE, Pedro Alexandre Favoretto et al. ORESTES are enriched in rare exon usage variants affecting the encoded proteins. C R Biologies, USA, v. 326, p. 979-985, 2003. |
| 50. | LOPES, Graziela Miê Peres; DE SOUZA, S. J.. Dissecting the Human Spliceosome Through Bioinformatics and Proteomics Approaches. Journal Of Bioinformatics And Computational Biology, v. 1, n. 4, p. 1-8, 2004. |
| 51. | GALANTE, Pedro Alexandre Favoretto; SAKABE, Noboru Jô; SALGER, Natanja Sara Kirschbaum et al. Detection and evaluation of intron retention events in the human transcriptome. Rna, USA, v. 10, p. 757-765, 2004. |
| 52. | IMANISHI, T; DE SOUZA, S. J.. Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones.. Plos Biology, USA, v. 2, p. 856-875, 2004. |
| 53. | SOGAYAR, M C; DE SOUZA, S. J.. A Transcript finishing initiative for closing gaps in the human transcriptome.. Genome Research, USA, v. 14, p. 1413-1423, 2004. |
| 54. | DE SOUZA, S. J.; NUNES, F M F. The used of Open Reading Frame ESTs (ORESTES) for analysis of the honeybee transcriptome.. Bmc Genomics, v. 5, p. 84, 2004. |
| 55. | FERREIRA, Elisa Napolitano e; PIRES, Lilian C; PARMIGIANI, Raphael Bessa et al. Identification and characterization of new human genes through the use of mouse orthologs and testis cDNA sequences.. Genetics and molecular research, v. 3, n. 4, p. 493-511, 2004. |
| 56. | SLAGER, Natanja S Kirschbaum; LOPES, Graziela M P; GALANTE, Pedro A F et al. Splicing factors are differentially expressed in the tumors.. Genetics and molecular research, USA, v. 3, n. 4, p. 512-520, 2004. |
| 57. | SAKABE, Noboru Jô; VIBRANOVISK, Maria Dulcetti; DE SOUZA, S. J.. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins.. Genetics and molecular research, USA, v. 3, n. 4, p. 532-544, 2004. |
| 58. | SILVA, Ana Paula M; SOUZA, Jorge e S de; GALANTE, Pedro A F et al. The impact of SNPs on the interpretation of SAGE and MPSS experimental data.. Nucleic Acids Research, v. 32, n. 20, p. 6104-6110, 2004. |
| 59. | TANINO, Motohiko; DEBILY, Marie Anne; TAMURA, Takuro et al. The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.. Nucleic Acids Research, v. 33, p. D567-D572, 2005. |
| 60. | DE SOUZA, S. J.; GALANTE, Pedro Alexandre F. Using ORESTES ESTs to mine gene cancer expression data. In: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics.. John Wiley And Sons Ltd, 2005. |