To run pescador do the following steps:
1. Query PubMed
with: preimplantation development
2. Save the PubMed
IDs: Send to File, Format PMID List
3. Choose training set (select
informative abstract manually) or use:
16571911
15657073
19289085
15788452
16980957
18824471
10801796
11584012
18804426
4.
Open MedLineRanker: http://cbdm.mdc-berlin.de/tools/medlineranker/
5.
Prepare the form as below and Rank it
The
query topic (the training set) is defined by:
·
the
following list of PMIDs
paste the
trainning set in the box
The
reference (the background set) is defined by:
·
the
following list of PMIDs
paste the
saved PMID List in the Box
The
abstracts to be ranked (the test set) are defined by:
· the background set
6. Either select by p-value or submmit all to PESCADOR
http://cbdm.mdc-berlin.de/~pescador/
7. See the Reports of NLProt and LAITOR and manually inspect the results.
For
reference, see the manuscript under review from Donnard et al.